The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.
Identifieur interne : 003446 ( Main/Exploration ); précédent : 003445; suivant : 003447The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.
Auteurs : France Denoeud [France] ; Lorenzo Carretero-Paulet [États-Unis] ; Alexis Dereeper [France] ; Gaëtan Droc [France] ; Romain Guyot [France] ; Marco Pietrella [Italie] ; Chunfang Zheng [Canada] ; Adriana Alberti [France] ; François Anthony [France] ; Giuseppe Aprea [Italie] ; Jean-Marc Aury [France] ; Pascal Bento [France] ; Maria Bernard [France] ; Stéphanie Bocs [France] ; Claudine Campa [France] ; Alberto Cenci [France] ; Marie-Christine Combes [France] ; Dominique Crouzillat [France] ; Corinne Da Silva [France] ; Loretta Daddiego [Italie] ; Fabien De Bellis [France] ; Stéphane Dussert [France] ; Olivier Garsmeur [France] ; Thomas Gayraud [France] ; Valentin Guignon [France] ; Katharina Jahn [Allemagne] ; Véronique Jamilloux [France] ; Thierry Joët [France] ; Karine Labadie [France] ; Tianying Lan [République populaire de Chine] ; Julie Leclercq [France] ; Maud Lepelley [France] ; Thierry Leroy [France] ; Lei-Ting Li [États-Unis] ; Pablo Librado [Espagne] ; Loredana Lopez [Italie] ; Adriana Mu Oz [Canada] ; Benjamin Noel [France] ; Alberto Pallavicini [Italie] ; Gaetano Perrotta [Italie] ; Valérie Poncet [France] ; David Pot [France] ; Priyono [Indonésie] ; Michel Rigoreau [France] ; Mathieu Rouard [France] ; Julio Rozas [Espagne] ; Christine Tranchant-Dubreuil [France] ; Robert Vanburen [États-Unis] ; Qiong Zhang [États-Unis] ; Alan C. Andrade [Brésil] ; Xavier Argout [France] ; Benoît Bertrand [France] ; Alexandre De Kochko [France] ; Giorgio Graziosi [Italie] ; Robert J. Henry [Australie] ; Jayarama [Inde] ; Ray Ming [États-Unis] ; Chifumi Nagai [États-Unis] ; Steve Rounsley [États-Unis] ; David Sankoff [Canada] ; Giovanni Giuliano [Italie] ; Victor A. Albert [États-Unis] ; Patrick Wincker [France] ; Philippe Lashermes [France]Source :
- Science (New York, N.Y.) [ 1095-9203 ] ; 2014.
Descripteurs français
- KwdFr :
- MESH :
- biosynthèse : Caféine.
- génétique : Caféine, Coffea, Methyltransferases, Protéines végétales.
- physiologie : Methyltransferases, Protéines végétales.
- Coffea, Génome végétal, Phylogénie, Évolution moléculaire.
English descriptors
- KwdEn :
- MESH :
- chemical , biosynthesis : Caffeine.
- chemical , genetics : Caffeine, Methyltransferases, Plant Proteins.
- classification : Coffea.
- genetics : Coffea.
- chemical , physiology : Methyltransferases, Plant Proteins.
- Evolution, Molecular, Genome, Plant, Phylogeny.
Abstract
Coffee is a valuable beverage crop due to its characteristic flavor, aroma, and the stimulating effects of caffeine. We generated a high-quality draft genome of the species Coffea canephora, which displays a conserved chromosomal gene order among asterid angiosperms. Although it shows no sign of the whole-genome triplication identified in Solanaceae species such as tomato, the genome includes several species-specific gene family expansions, among them N-methyltransferases (NMTs) involved in caffeine production, defense-related genes, and alkaloid and flavonoid enzymes involved in secondary compound synthesis. Comparative analyses of caffeine NMTs demonstrate that these genes expanded through sequential tandem duplications independently of genes from cacao and tea, suggesting that caffeine in eudicots is of polyphyletic origin.
DOI: 10.1126/science.1255274
PubMed: 25190796
Affiliations:
- Allemagne, Australie, Brésil, Canada, Espagne, France, Inde, Indonésie, Italie, République populaire de Chine, États-Unis
- Arizona, Catalogne, Hawaï, Illinois, Latium, Maryland, État de New York, Île-de-France
- Barcelone, Buffalo (New York), College Park (Maryland), Rome, Évry (Essonne)
- Université d'État de New York à Buffalo, Université de Barcelone, Université du Maryland
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Le document en format XML
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uniqKey="Zheng C" first="Chunfang" last="Zheng">Chunfang Zheng</name><affiliation wicri:level="1"><nlm:affiliation>Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, Ontario K1N 6N5, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, Ontario K1N 6N5</wicri:regionArea><wicri:noRegion>Ontario K1N 6N5</wicri:noRegion></affiliation></author><author><name sortKey="Alberti, Adriana" sort="Alberti, Adriana" uniqKey="Alberti A" first="Adriana" last="Alberti">Adriana Alberti</name><affiliation wicri:level="1"><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry</wicri:regionArea><wicri:noRegion>91057 Evry</wicri:noRegion><wicri:noRegion>91057 Evry</wicri:noRegion></affiliation></author><author><name sortKey="Anthony, Francois" sort="Anthony, Francois" uniqKey="Anthony F" first="François" last="Anthony">François Anthony</name><affiliation wicri:level="1"><nlm:affiliation>Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Aprea, Giuseppe" sort="Aprea, Giuseppe" uniqKey="Aprea G" first="Giuseppe" last="Aprea">Giuseppe Aprea</name><affiliation wicri:level="1"><nlm:affiliation>Italian National Agency for New Technologies, Energy and Sustainable Development (ENEA) Casaccia Research Center, Via Anguillarese 301, 00123 Roma, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Italian National Agency for New Technologies, Energy and Sustainable Development (ENEA) Casaccia Research Center, Via Anguillarese 301, 00123 Roma</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Aury, Jean Marc" sort="Aury, Jean Marc" uniqKey="Aury J" first="Jean-Marc" last="Aury">Jean-Marc Aury</name><affiliation wicri:level="1"><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry</wicri:regionArea><wicri:noRegion>91057 Evry</wicri:noRegion><wicri:noRegion>91057 Evry</wicri:noRegion></affiliation></author><author><name sortKey="Bento, Pascal" sort="Bento, Pascal" uniqKey="Bento P" first="Pascal" last="Bento">Pascal Bento</name><affiliation wicri:level="1"><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry</wicri:regionArea><wicri:noRegion>91057 Evry</wicri:noRegion><wicri:noRegion>91057 Evry</wicri:noRegion></affiliation></author><author><name sortKey="Bernard, Maria" sort="Bernard, Maria" uniqKey="Bernard M" first="Maria" last="Bernard">Maria Bernard</name><affiliation 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Montpellier</wicri:noRegion><wicri:noRegion>34398 Montpellier</wicri:noRegion></affiliation></author><author><name sortKey="Campa, Claudine" sort="Campa, Claudine" uniqKey="Campa C" first="Claudine" last="Campa">Claudine Campa</name><affiliation wicri:level="1"><nlm:affiliation>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Cenci, Alberto" sort="Cenci, Alberto" uniqKey="Cenci A" first="Alberto" last="Cenci">Alberto Cenci</name><affiliation wicri:level="1"><nlm:affiliation>Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5, France. Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5, France. Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34397 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34397 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Combes, Marie Christine" sort="Combes, Marie Christine" uniqKey="Combes M" first="Marie-Christine" last="Combes">Marie-Christine Combes</name><affiliation wicri:level="1"><nlm:affiliation>Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Crouzillat, Dominique" sort="Crouzillat, Dominique" uniqKey="Crouzillat D" first="Dominique" last="Crouzillat">Dominique Crouzillat</name><affiliation wicri:level="1"><nlm:affiliation>Nestlé Research and Development Centre, 101 Avenue Gustave Eiffel, Notre-Dame-d'Oé, BP 49716, 37097 Tours Cedex 2, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Nestlé Research and Development Centre, 101 Avenue Gustave Eiffel, Notre-Dame-d'Oé, BP 49716, 37097 Tours Cedex 2</wicri:regionArea><wicri:noRegion>37097 Tours Cedex 2</wicri:noRegion><wicri:noRegion>37097 Tours Cedex 2</wicri:noRegion></affiliation></author><author><name sortKey="Da Silva, Corinne" sort="Da Silva, Corinne" uniqKey="Da Silva C" first="Corinne" last="Da Silva">Corinne Da Silva</name><affiliation wicri:level="1"><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry</wicri:regionArea><wicri:noRegion>91057 Evry</wicri:noRegion><wicri:noRegion>91057 Evry</wicri:noRegion></affiliation></author><author><name sortKey="Daddiego, Loretta" sort="Daddiego, Loretta" uniqKey="Daddiego L" first="Loretta" last="Daddiego">Loretta Daddiego</name><affiliation wicri:level="1"><nlm:affiliation>ENEA Trisaia Research Center, 75026 Rotondella, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>ENEA Trisaia Research Center, 75026 Rotondella</wicri:regionArea><wicri:noRegion>75026 Rotondella</wicri:noRegion></affiliation></author><author><name sortKey="De Bellis, Fabien" sort="De Bellis, Fabien" uniqKey="De Bellis F" first="Fabien" last="De Bellis">Fabien De Bellis</name><affiliation wicri:level="1"><nlm:affiliation>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier</wicri:regionArea><wicri:noRegion>34398 Montpellier</wicri:noRegion><wicri:noRegion>34398 Montpellier</wicri:noRegion></affiliation></author><author><name sortKey="Dussert, Stephane" sort="Dussert, Stephane" uniqKey="Dussert S" first="Stéphane" last="Dussert">Stéphane Dussert</name><affiliation wicri:level="1"><nlm:affiliation>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Garsmeur, Olivier" sort="Garsmeur, Olivier" uniqKey="Garsmeur O" first="Olivier" last="Garsmeur">Olivier Garsmeur</name><affiliation wicri:level="1"><nlm:affiliation>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier</wicri:regionArea><wicri:noRegion>34398 Montpellier</wicri:noRegion><wicri:noRegion>34398 Montpellier</wicri:noRegion></affiliation></author><author><name sortKey="Gayraud, Thomas" sort="Gayraud, Thomas" uniqKey="Gayraud T" first="Thomas" last="Gayraud">Thomas Gayraud</name><affiliation wicri:level="1"><nlm:affiliation>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Guignon, Valentin" sort="Guignon, Valentin" uniqKey="Guignon V" first="Valentin" last="Guignon">Valentin Guignon</name><affiliation wicri:level="1"><nlm:affiliation>Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34397 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34397 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Jahn, Katharina" sort="Jahn, Katharina" uniqKey="Jahn K" first="Katharina" last="Jahn">Katharina Jahn</name><affiliation wicri:level="1"><nlm:affiliation>Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, Ontario K1N 6N5, Canada. Center for Biotechnology, Universität Bielefeld, Universitätsstraße 27, D-33615 Bielefeld, Germany. AG Genominformatik, Technische Fakultät, Universität Bielefeld, 33594 Bielefeld, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, Ontario K1N 6N5, Canada. Center for Biotechnology, Universität Bielefeld, Universitätsstraße 27, D-33615 Bielefeld, Germany. AG Genominformatik, Technische Fakultät, Universität Bielefeld, 33594 Bielefeld</wicri:regionArea><wicri:noRegion>33594 Bielefeld</wicri:noRegion><wicri:noRegion>33594 Bielefeld</wicri:noRegion><wicri:noRegion>33594 Bielefeld</wicri:noRegion></affiliation></author><author><name sortKey="Jamilloux, Veronique" sort="Jamilloux, Veronique" uniqKey="Jamilloux V" first="Véronique" last="Jamilloux">Véronique Jamilloux</name><affiliation wicri:level="1"><nlm:affiliation>Institut National de la Recherche Agronomique (INRA), Unité de Recherches en Génomique-Info (UR INRA 1164), Centre de Recherche de Versailles, 78026 Versailles Cedex, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut National de la Recherche Agronomique (INRA), Unité de Recherches en Génomique-Info (UR INRA 1164), Centre de Recherche de Versailles, 78026 Versailles Cedex</wicri:regionArea><wicri:noRegion>78026 Versailles Cedex</wicri:noRegion><wicri:noRegion>78026 Versailles Cedex</wicri:noRegion></affiliation></author><author><name sortKey="Joet, Thierry" sort="Joet, Thierry" uniqKey="Joet T" first="Thierry" last="Joët">Thierry Joët</name><affiliation wicri:level="1"><nlm:affiliation>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Labadie, Karine" sort="Labadie, Karine" uniqKey="Labadie K" first="Karine" last="Labadie">Karine Labadie</name><affiliation wicri:level="1"><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry</wicri:regionArea><wicri:noRegion>91057 Evry</wicri:noRegion><wicri:noRegion>91057 Evry</wicri:noRegion></affiliation></author><author><name sortKey="Lan, Tianying" sort="Lan, Tianying" uniqKey="Lan T" first="Tianying" last="Lan">Tianying Lan</name><affiliation wicri:level="4"><nlm:affiliation>Department of Biological Sciences, 109 Cooke Hall, University at Buffalo (State University of New York), Buffalo, NY 14260, USA. Department of Biology, Chongqing University of Science and Technology, 4000042 Chongqing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Biological Sciences, 109 Cooke Hall, University at Buffalo (State University of New York), Buffalo, NY 14260, USA. Department of Biology, Chongqing University of Science and Technology, 4000042 Chongqing</wicri:regionArea><orgName type="university">Université d'État de New York à Buffalo</orgName><placeName><settlement type="city">Buffalo (New York)</settlement><region type="state">État de New York</region></placeName></affiliation></author><author><name sortKey="Leclercq, Julie" sort="Leclercq, Julie" uniqKey="Leclercq J" first="Julie" last="Leclercq">Julie Leclercq</name><affiliation wicri:level="1"><nlm:affiliation>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier</wicri:regionArea><wicri:noRegion>34398 Montpellier</wicri:noRegion><wicri:noRegion>34398 Montpellier</wicri:noRegion></affiliation></author><author><name sortKey="Lepelley, Maud" sort="Lepelley, Maud" uniqKey="Lepelley M" first="Maud" last="Lepelley">Maud Lepelley</name><affiliation wicri:level="1"><nlm:affiliation>Nestlé Research and Development Centre, 101 Avenue Gustave Eiffel, Notre-Dame-d'Oé, BP 49716, 37097 Tours Cedex 2, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Nestlé Research and Development Centre, 101 Avenue Gustave Eiffel, Notre-Dame-d'Oé, BP 49716, 37097 Tours Cedex 2</wicri:regionArea><wicri:noRegion>37097 Tours Cedex 2</wicri:noRegion><wicri:noRegion>37097 Tours Cedex 2</wicri:noRegion></affiliation></author><author><name sortKey="Leroy, Thierry" sort="Leroy, Thierry" uniqKey="Leroy T" first="Thierry" last="Leroy">Thierry Leroy</name><affiliation wicri:level="1"><nlm:affiliation>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier</wicri:regionArea><wicri:noRegion>34398 Montpellier</wicri:noRegion><wicri:noRegion>34398 Montpellier</wicri:noRegion></affiliation></author><author><name sortKey="Li, Lei Ting" sort="Li, Lei Ting" uniqKey="Li L" first="Lei-Ting" last="Li">Lei-Ting Li</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Biology, 148 Edward R. Madigan Laboratory, MC-051, 1201 West Gregory Drive, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, 148 Edward R. Madigan Laboratory, MC-051, 1201 West Gregory Drive, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea><placeName><region type="state">Illinois</region></placeName></affiliation></author><author><name sortKey="Librado, Pablo" sort="Librado, Pablo" uniqKey="Librado P" first="Pablo" last="Librado">Pablo Librado</name><affiliation wicri:level="4"><nlm:affiliation>Departament de Genètica and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Diagonal 643, Barcelona 08028, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Departament de Genètica and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Diagonal 643, Barcelona 08028</wicri:regionArea><placeName><settlement type="city">Barcelone</settlement><region nuts="2" type="region">Catalogne</region><settlement type="city">Barcelone</settlement></placeName><orgName type="university">Université de Barcelone</orgName></affiliation></author><author><name sortKey="Lopez, Loredana" sort="Lopez, Loredana" uniqKey="Lopez L" first="Loredana" last="Lopez">Loredana Lopez</name><affiliation wicri:level="1"><nlm:affiliation>ENEA Trisaia Research Center, 75026 Rotondella, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>ENEA Trisaia Research Center, 75026 Rotondella</wicri:regionArea><wicri:noRegion>75026 Rotondella</wicri:noRegion></affiliation></author><author><name sortKey="Mu Oz, Adriana" sort="Mu Oz, Adriana" uniqKey="Mu Oz A" first="Adriana" last="Mu Oz">Adriana Mu Oz</name><affiliation wicri:level="4"><nlm:affiliation>Department of Mathematics, University of Maryland, Mathematics Building 084, University of Maryland, College Park, MD 20742, USA. School of Electrical Engineering and Computer Science, University of Ottawa, 800 King Edward Avenue, Ottawa, Ontario K1N 6N5, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Mathematics, University of Maryland, Mathematics Building 084, University of Maryland, College Park, MD 20742, USA. School of Electrical Engineering and Computer Science, University of Ottawa, 800 King Edward Avenue, Ottawa, Ontario K1N 6N5</wicri:regionArea><orgName type="university">Université du Maryland</orgName><placeName><settlement type="city">College Park (Maryland)</settlement><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Noel, Benjamin" sort="Noel, Benjamin" uniqKey="Noel B" first="Benjamin" last="Noel">Benjamin Noel</name><affiliation wicri:level="1"><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry</wicri:regionArea><wicri:noRegion>91057 Evry</wicri:noRegion><wicri:noRegion>91057 Evry</wicri:noRegion></affiliation></author><author><name sortKey="Pallavicini, Alberto" sort="Pallavicini, Alberto" uniqKey="Pallavicini A" first="Alberto" last="Pallavicini">Alberto Pallavicini</name><affiliation wicri:level="1"><nlm:affiliation>Department of Life Sciences, University of Trieste, Via Licio Giorgieri 5, 34127 Trieste, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Life Sciences, University of Trieste, Via Licio Giorgieri 5, 34127 Trieste</wicri:regionArea><wicri:noRegion>34127 Trieste</wicri:noRegion></affiliation></author><author><name sortKey="Perrotta, Gaetano" sort="Perrotta, Gaetano" uniqKey="Perrotta G" first="Gaetano" last="Perrotta">Gaetano Perrotta</name><affiliation wicri:level="1"><nlm:affiliation>ENEA Trisaia Research Center, 75026 Rotondella, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>ENEA Trisaia Research Center, 75026 Rotondella</wicri:regionArea><wicri:noRegion>75026 Rotondella</wicri:noRegion></affiliation></author><author><name sortKey="Poncet, Valerie" sort="Poncet, Valerie" uniqKey="Poncet V" first="Valérie" last="Poncet">Valérie Poncet</name><affiliation wicri:level="1"><nlm:affiliation>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Pot, David" sort="Pot, David" uniqKey="Pot D" first="David" last="Pot">David Pot</name><affiliation wicri:level="1"><nlm:affiliation>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier</wicri:regionArea><wicri:noRegion>34398 Montpellier</wicri:noRegion><wicri:noRegion>34398 Montpellier</wicri:noRegion></affiliation></author><author><name sortKey="Priyono" sort="Priyono" uniqKey="Priyono" last="Priyono">Priyono</name><affiliation wicri:level="1"><nlm:affiliation>Indonesian Coffee and Cocoa Institute, Jember, East Java, Indonesia.</nlm:affiliation><country xml:lang="fr">Indonésie</country><wicri:regionArea>Indonesian Coffee and Cocoa Institute, Jember, East Java</wicri:regionArea><wicri:noRegion>East Java</wicri:noRegion></affiliation></author><author><name sortKey="Rigoreau, Michel" sort="Rigoreau, Michel" uniqKey="Rigoreau M" first="Michel" last="Rigoreau">Michel Rigoreau</name><affiliation wicri:level="1"><nlm:affiliation>Nestlé Research and Development Centre, 101 Avenue Gustave Eiffel, Notre-Dame-d'Oé, BP 49716, 37097 Tours Cedex 2, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Nestlé Research and Development Centre, 101 Avenue Gustave Eiffel, Notre-Dame-d'Oé, BP 49716, 37097 Tours Cedex 2</wicri:regionArea><wicri:noRegion>37097 Tours Cedex 2</wicri:noRegion><wicri:noRegion>37097 Tours Cedex 2</wicri:noRegion></affiliation></author><author><name sortKey="Rouard, Mathieu" sort="Rouard, Mathieu" uniqKey="Rouard M" first="Mathieu" last="Rouard">Mathieu Rouard</name><affiliation wicri:level="1"><nlm:affiliation>Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34397 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34397 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Rozas, Julio" sort="Rozas, Julio" uniqKey="Rozas J" first="Julio" last="Rozas">Julio Rozas</name><affiliation wicri:level="4"><nlm:affiliation>Departament de Genètica and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Diagonal 643, Barcelona 08028, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Departament de Genètica and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Diagonal 643, Barcelona 08028</wicri:regionArea><placeName><settlement type="city">Barcelone</settlement><region nuts="2" type="region">Catalogne</region><settlement type="city">Barcelone</settlement></placeName><orgName type="university">Université de Barcelone</orgName></affiliation></author><author><name sortKey="Tranchant Dubreuil, Christine" sort="Tranchant Dubreuil, Christine" uniqKey="Tranchant Dubreuil C" first="Christine" last="Tranchant-Dubreuil">Christine Tranchant-Dubreuil</name><affiliation wicri:level="1"><nlm:affiliation>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Vanburen, Robert" sort="Vanburen, Robert" uniqKey="Vanburen R" first="Robert" last="Vanburen">Robert Vanburen</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Biology, 148 Edward R. Madigan Laboratory, MC-051, 1201 West Gregory Drive, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, 148 Edward R. Madigan Laboratory, MC-051, 1201 West Gregory Drive, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea><placeName><region type="state">Illinois</region></placeName></affiliation></author><author><name sortKey="Zhang, Qiong" sort="Zhang, Qiong" uniqKey="Zhang Q" first="Qiong" last="Zhang">Qiong Zhang</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Biology, 148 Edward R. Madigan Laboratory, MC-051, 1201 West Gregory Drive, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, 148 Edward R. Madigan Laboratory, MC-051, 1201 West Gregory Drive, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea><placeName><region type="state">Illinois</region></placeName></affiliation></author><author><name sortKey="Andrade, Alan C" sort="Andrade, Alan C" uniqKey="Andrade A" first="Alan C" last="Andrade">Alan C. Andrade</name><affiliation wicri:level="1"><nlm:affiliation>Laboratório de Genética Molecular, Núcleo de Biotecnologia (NTBio), Embrapa Recursos Genéticos e Biotecnologia, Final Av. W/5 Norte, Parque Estação Biológia, Brasília-DF 70770-917, Brazil.</nlm:affiliation><country xml:lang="fr">Brésil</country><wicri:regionArea>Laboratório de Genética Molecular, Núcleo de Biotecnologia (NTBio), Embrapa Recursos Genéticos e Biotecnologia, Final Av. W/5 Norte, Parque Estação Biológia, Brasília-DF 70770-917</wicri:regionArea><wicri:noRegion>Brasília-DF 70770-917</wicri:noRegion></affiliation></author><author><name sortKey="Argout, Xavier" sort="Argout, Xavier" uniqKey="Argout X" first="Xavier" last="Argout">Xavier Argout</name><affiliation wicri:level="1"><nlm:affiliation>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier</wicri:regionArea><wicri:noRegion>34398 Montpellier</wicri:noRegion><wicri:noRegion>34398 Montpellier</wicri:noRegion></affiliation></author><author><name sortKey="Bertrand, Benoit" sort="Bertrand, Benoit" uniqKey="Bertrand B" first="Benoît" last="Bertrand">Benoît Bertrand</name><affiliation wicri:level="1"><nlm:affiliation>CIRAD, UMR RPB (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR RPB (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="De Kochko, Alexandre" sort="De Kochko, Alexandre" uniqKey="De Kochko A" first="Alexandre" last="De Kochko">Alexandre De Kochko</name><affiliation wicri:level="1"><nlm:affiliation>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Graziosi, Giorgio" sort="Graziosi, Giorgio" uniqKey="Graziosi G" first="Giorgio" last="Graziosi">Giorgio Graziosi</name><affiliation wicri:level="1"><nlm:affiliation>Department of Life Sciences, University of Trieste, Via Licio Giorgieri 5, 34127 Trieste, Italy. DNA Analytica Srl, Via Licio Giorgieri 5, 34127 Trieste, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Life Sciences, University of Trieste, Via Licio Giorgieri 5, 34127 Trieste, Italy. DNA Analytica Srl, Via Licio Giorgieri 5, 34127 Trieste</wicri:regionArea><wicri:noRegion>34127 Trieste</wicri:noRegion></affiliation></author><author><name sortKey="Henry, Robert J" sort="Henry, Robert J" uniqKey="Henry R" first="Robert J" last="Henry">Robert J. Henry</name><affiliation wicri:level="1"><nlm:affiliation>Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, St. Lucia 4072, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, St. Lucia 4072</wicri:regionArea><wicri:noRegion>St. Lucia 4072</wicri:noRegion></affiliation></author><author><name sortKey="Jayarama" sort="Jayarama" uniqKey="Jayarama" last="Jayarama">Jayarama</name><affiliation wicri:level="1"><nlm:affiliation>Central Coffee Research Institute, Coffee Board, Coffee Research Station (Post) - 577 117 Chikmagalur District, Karnataka State, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Central Coffee Research Institute, Coffee Board, Coffee Research Station (Post) - 577 117 Chikmagalur District, Karnataka State</wicri:regionArea><wicri:noRegion>Karnataka State</wicri:noRegion></affiliation></author><author><name sortKey="Ming, Ray" sort="Ming, Ray" uniqKey="Ming R" first="Ray" last="Ming">Ray Ming</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Biology, 148 Edward R. Madigan Laboratory, MC-051, 1201 West Gregory Drive, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, 148 Edward R. Madigan Laboratory, MC-051, 1201 West Gregory Drive, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea><placeName><region type="state">Illinois</region></placeName></affiliation></author><author><name sortKey="Nagai, Chifumi" sort="Nagai, Chifumi" uniqKey="Nagai C" first="Chifumi" last="Nagai">Chifumi Nagai</name><affiliation wicri:level="2"><nlm:affiliation>Hawaii Agriculture Research Center, Post Office Box 100, Kunia, HI 96759-0100, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Hawaii Agriculture Research Center, Post Office Box 100, Kunia, HI 96759-0100</wicri:regionArea><placeName><region type="state">Hawaï</region></placeName></affiliation></author><author><name sortKey="Rounsley, Steve" sort="Rounsley, Steve" uniqKey="Rounsley S" first="Steve" last="Rounsley">Steve Rounsley</name><affiliation wicri:level="2"><nlm:affiliation>BIO5 Institute, University of Arizona, 1657 Helen Street, Tucson, AZ 85721, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>BIO5 Institute, University of Arizona, 1657 Helen Street, Tucson, AZ 85721</wicri:regionArea><placeName><region type="state">Arizona</region></placeName></affiliation></author><author><name sortKey="Sankoff, David" sort="Sankoff, David" uniqKey="Sankoff D" first="David" last="Sankoff">David Sankoff</name><affiliation wicri:level="1"><nlm:affiliation>Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, Ontario K1N 6N5, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, Ontario K1N 6N5</wicri:regionArea><wicri:noRegion>Ontario K1N 6N5</wicri:noRegion></affiliation></author><author><name sortKey="Giuliano, Giovanni" sort="Giuliano, Giovanni" uniqKey="Giuliano G" first="Giovanni" last="Giuliano">Giovanni Giuliano</name><affiliation wicri:level="1"><nlm:affiliation>Italian National Agency for New Technologies, Energy and Sustainable Development (ENEA) Casaccia Research Center, Via Anguillarese 301, 00123 Roma, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Italian National Agency for New Technologies, Energy and Sustainable Development (ENEA) Casaccia Research Center, Via Anguillarese 301, 00123 Roma</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Albert, Victor A" sort="Albert, Victor A" uniqKey="Albert V" first="Victor A" last="Albert">Victor A. Albert</name><affiliation wicri:level="4"><nlm:affiliation>Department of Biological Sciences, 109 Cooke Hall, University at Buffalo (State University of New York), Buffalo, NY 14260, USA. vaalbert@buffalo.edu pwincker@genoscope.cns.fr philippe.lashermes@ird.fr.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biological Sciences, 109 Cooke Hall, University at Buffalo (State University of New York), Buffalo, NY 14260</wicri:regionArea><placeName><region type="state">État de New York</region><settlement type="city">Buffalo (New York)</settlement></placeName><orgName type="university">Université d'État de New York à Buffalo</orgName></affiliation></author><author><name sortKey="Wincker, Patrick" sort="Wincker, Patrick" uniqKey="Wincker P" first="Patrick" last="Wincker">Patrick Wincker</name><affiliation wicri:level="3"><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France. CNRS, UMR 8030, CP5706, Evry, France. Université d'Evry, UMR 8030, CP5706, Evry, France. vaalbert@buffalo.edu pwincker@genoscope.cns.fr philippe.lashermes@ird.fr.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France. CNRS, UMR 8030, CP5706, Evry, France. Université d'Evry, UMR 8030, CP5706, Evry</wicri:regionArea><placeName><region type="region">Île-de-France</region><region type="old region">Île-de-France</region><settlement type="city">Évry (Essonne)</settlement></placeName></affiliation></author><author><name sortKey="Lashermes, Philippe" sort="Lashermes, Philippe" uniqKey="Lashermes P" first="Philippe" last="Lashermes">Philippe Lashermes</name><affiliation wicri:level="1"><nlm:affiliation>Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5, France. vaalbert@buffalo.edu pwincker@genoscope.cns.fr philippe.lashermes@ird.fr.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2014">2014</date><idno type="RBID">pubmed:25190796</idno><idno type="pmid">25190796</idno><idno type="doi">10.1126/science.1255274</idno><idno type="wicri:Area/PubMed/Corpus">003460</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">003460</idno><idno type="wicri:Area/PubMed/Curation">003347</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">003347</idno><idno type="wicri:Area/PubMed/Checkpoint">003347</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">003347</idno><idno type="wicri:Area/Ncbi/Merge">001D74</idno><idno type="wicri:Area/Ncbi/Curation">001D74</idno><idno type="wicri:Area/Ncbi/Checkpoint">001D74</idno><idno type="wicri:Area/Main/Merge">003460</idno><idno type="wicri:Area/Main/Curation">003446</idno><idno type="wicri:Area/Main/Exploration">003446</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.</title><author><name sortKey="Denoeud, France" sort="Denoeud, France" uniqKey="Denoeud F" first="France" last="Denoeud">France Denoeud</name><affiliation wicri:level="3"><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France. CNRS, UMR 8030, CP5706, Evry, France. Université d'Evry, UMR 8030, CP5706, Evry, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France. CNRS, UMR 8030, CP5706, Evry, France. Université d'Evry, UMR 8030, CP5706, Evry</wicri:regionArea><placeName><region type="region">Île-de-France</region><region type="old region">Île-de-France</region><settlement type="city">Évry (Essonne)</settlement></placeName></affiliation></author><author><name sortKey="Carretero Paulet, Lorenzo" sort="Carretero Paulet, Lorenzo" uniqKey="Carretero Paulet L" first="Lorenzo" last="Carretero-Paulet">Lorenzo Carretero-Paulet</name><affiliation wicri:level="4"><nlm:affiliation>Department of Biological Sciences, 109 Cooke Hall, University at Buffalo (State University of New York), Buffalo, NY 14260, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biological Sciences, 109 Cooke Hall, University at Buffalo (State University of New York), Buffalo, NY 14260</wicri:regionArea><placeName><region type="state">État de New York</region><settlement type="city">Buffalo (New York)</settlement></placeName><orgName type="university">Université d'État de New York à Buffalo</orgName></affiliation></author><author><name sortKey="Dereeper, Alexis" sort="Dereeper, Alexis" uniqKey="Dereeper A" first="Alexis" last="Dereeper">Alexis Dereeper</name><affiliation wicri:level="1"><nlm:affiliation>Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Droc, Gaetan" sort="Droc, Gaetan" uniqKey="Droc G" first="Gaëtan" last="Droc">Gaëtan Droc</name><affiliation wicri:level="1"><nlm:affiliation>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier</wicri:regionArea><wicri:noRegion>34398 Montpellier</wicri:noRegion><wicri:noRegion>34398 Montpellier</wicri:noRegion></affiliation></author><author><name sortKey="Guyot, Romain" sort="Guyot, Romain" uniqKey="Guyot R" first="Romain" last="Guyot">Romain Guyot</name><affiliation wicri:level="1"><nlm:affiliation>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Pietrella, Marco" sort="Pietrella, Marco" uniqKey="Pietrella M" first="Marco" last="Pietrella">Marco Pietrella</name><affiliation wicri:level="1"><nlm:affiliation>Italian National Agency for New Technologies, Energy and Sustainable Development (ENEA) Casaccia Research Center, Via Anguillarese 301, 00123 Roma, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Italian National Agency for New Technologies, Energy and Sustainable Development (ENEA) Casaccia Research Center, Via Anguillarese 301, 00123 Roma</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Zheng, Chunfang" sort="Zheng, Chunfang" uniqKey="Zheng C" first="Chunfang" last="Zheng">Chunfang Zheng</name><affiliation wicri:level="1"><nlm:affiliation>Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, Ontario K1N 6N5, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, Ontario K1N 6N5</wicri:regionArea><wicri:noRegion>Ontario K1N 6N5</wicri:noRegion></affiliation></author><author><name sortKey="Alberti, Adriana" sort="Alberti, Adriana" uniqKey="Alberti A" first="Adriana" last="Alberti">Adriana Alberti</name><affiliation wicri:level="1"><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry</wicri:regionArea><wicri:noRegion>91057 Evry</wicri:noRegion><wicri:noRegion>91057 Evry</wicri:noRegion></affiliation></author><author><name sortKey="Anthony, Francois" sort="Anthony, Francois" uniqKey="Anthony F" first="François" last="Anthony">François Anthony</name><affiliation wicri:level="1"><nlm:affiliation>Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Aprea, Giuseppe" sort="Aprea, Giuseppe" uniqKey="Aprea G" first="Giuseppe" last="Aprea">Giuseppe Aprea</name><affiliation wicri:level="1"><nlm:affiliation>Italian National Agency for New Technologies, Energy and Sustainable Development (ENEA) Casaccia Research Center, Via Anguillarese 301, 00123 Roma, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Italian National Agency for New Technologies, Energy and Sustainable Development (ENEA) Casaccia Research Center, Via Anguillarese 301, 00123 Roma</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Aury, Jean Marc" sort="Aury, Jean Marc" uniqKey="Aury J" first="Jean-Marc" last="Aury">Jean-Marc Aury</name><affiliation wicri:level="1"><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry</wicri:regionArea><wicri:noRegion>91057 Evry</wicri:noRegion><wicri:noRegion>91057 Evry</wicri:noRegion></affiliation></author><author><name sortKey="Bento, Pascal" sort="Bento, Pascal" uniqKey="Bento P" first="Pascal" last="Bento">Pascal Bento</name><affiliation wicri:level="1"><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry</wicri:regionArea><wicri:noRegion>91057 Evry</wicri:noRegion><wicri:noRegion>91057 Evry</wicri:noRegion></affiliation></author><author><name sortKey="Bernard, Maria" sort="Bernard, Maria" uniqKey="Bernard M" first="Maria" last="Bernard">Maria Bernard</name><affiliation wicri:level="1"><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry</wicri:regionArea><wicri:noRegion>91057 Evry</wicri:noRegion><wicri:noRegion>91057 Evry</wicri:noRegion></affiliation></author><author><name sortKey="Bocs, Stephanie" sort="Bocs, Stephanie" uniqKey="Bocs S" first="Stéphanie" last="Bocs">Stéphanie Bocs</name><affiliation wicri:level="1"><nlm:affiliation>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier</wicri:regionArea><wicri:noRegion>34398 Montpellier</wicri:noRegion><wicri:noRegion>34398 Montpellier</wicri:noRegion></affiliation></author><author><name sortKey="Campa, Claudine" sort="Campa, Claudine" uniqKey="Campa C" first="Claudine" last="Campa">Claudine Campa</name><affiliation wicri:level="1"><nlm:affiliation>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Cenci, Alberto" sort="Cenci, Alberto" uniqKey="Cenci A" first="Alberto" last="Cenci">Alberto Cenci</name><affiliation wicri:level="1"><nlm:affiliation>Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5, France. Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5, France. Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34397 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34397 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Combes, Marie Christine" sort="Combes, Marie Christine" uniqKey="Combes M" first="Marie-Christine" last="Combes">Marie-Christine Combes</name><affiliation wicri:level="1"><nlm:affiliation>Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Crouzillat, Dominique" sort="Crouzillat, Dominique" uniqKey="Crouzillat D" first="Dominique" last="Crouzillat">Dominique Crouzillat</name><affiliation wicri:level="1"><nlm:affiliation>Nestlé Research and Development Centre, 101 Avenue Gustave Eiffel, Notre-Dame-d'Oé, BP 49716, 37097 Tours Cedex 2, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Nestlé Research and Development Centre, 101 Avenue Gustave Eiffel, Notre-Dame-d'Oé, BP 49716, 37097 Tours Cedex 2</wicri:regionArea><wicri:noRegion>37097 Tours Cedex 2</wicri:noRegion><wicri:noRegion>37097 Tours Cedex 2</wicri:noRegion></affiliation></author><author><name sortKey="Da Silva, Corinne" sort="Da Silva, Corinne" uniqKey="Da Silva C" first="Corinne" last="Da Silva">Corinne Da Silva</name><affiliation wicri:level="1"><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry</wicri:regionArea><wicri:noRegion>91057 Evry</wicri:noRegion><wicri:noRegion>91057 Evry</wicri:noRegion></affiliation></author><author><name sortKey="Daddiego, Loretta" sort="Daddiego, Loretta" uniqKey="Daddiego L" first="Loretta" last="Daddiego">Loretta Daddiego</name><affiliation wicri:level="1"><nlm:affiliation>ENEA Trisaia Research Center, 75026 Rotondella, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>ENEA Trisaia Research Center, 75026 Rotondella</wicri:regionArea><wicri:noRegion>75026 Rotondella</wicri:noRegion></affiliation></author><author><name sortKey="De Bellis, Fabien" sort="De Bellis, Fabien" uniqKey="De Bellis F" first="Fabien" last="De Bellis">Fabien De Bellis</name><affiliation wicri:level="1"><nlm:affiliation>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier</wicri:regionArea><wicri:noRegion>34398 Montpellier</wicri:noRegion><wicri:noRegion>34398 Montpellier</wicri:noRegion></affiliation></author><author><name sortKey="Dussert, Stephane" sort="Dussert, Stephane" uniqKey="Dussert S" first="Stéphane" last="Dussert">Stéphane Dussert</name><affiliation wicri:level="1"><nlm:affiliation>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Garsmeur, Olivier" sort="Garsmeur, Olivier" uniqKey="Garsmeur O" first="Olivier" last="Garsmeur">Olivier Garsmeur</name><affiliation wicri:level="1"><nlm:affiliation>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier</wicri:regionArea><wicri:noRegion>34398 Montpellier</wicri:noRegion><wicri:noRegion>34398 Montpellier</wicri:noRegion></affiliation></author><author><name sortKey="Gayraud, Thomas" sort="Gayraud, Thomas" uniqKey="Gayraud T" first="Thomas" last="Gayraud">Thomas Gayraud</name><affiliation wicri:level="1"><nlm:affiliation>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Guignon, Valentin" sort="Guignon, Valentin" uniqKey="Guignon V" first="Valentin" last="Guignon">Valentin Guignon</name><affiliation wicri:level="1"><nlm:affiliation>Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34397 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34397 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Jahn, Katharina" sort="Jahn, Katharina" uniqKey="Jahn K" first="Katharina" last="Jahn">Katharina Jahn</name><affiliation wicri:level="1"><nlm:affiliation>Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, Ontario K1N 6N5, Canada. Center for Biotechnology, Universität Bielefeld, Universitätsstraße 27, D-33615 Bielefeld, Germany. AG Genominformatik, Technische Fakultät, Universität Bielefeld, 33594 Bielefeld, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, Ontario K1N 6N5, Canada. Center for Biotechnology, Universität Bielefeld, Universitätsstraße 27, D-33615 Bielefeld, Germany. AG Genominformatik, Technische Fakultät, Universität Bielefeld, 33594 Bielefeld</wicri:regionArea><wicri:noRegion>33594 Bielefeld</wicri:noRegion><wicri:noRegion>33594 Bielefeld</wicri:noRegion><wicri:noRegion>33594 Bielefeld</wicri:noRegion></affiliation></author><author><name sortKey="Jamilloux, Veronique" sort="Jamilloux, Veronique" uniqKey="Jamilloux V" first="Véronique" last="Jamilloux">Véronique Jamilloux</name><affiliation wicri:level="1"><nlm:affiliation>Institut National de la Recherche Agronomique (INRA), Unité de Recherches en Génomique-Info (UR INRA 1164), Centre de Recherche de Versailles, 78026 Versailles Cedex, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut National de la Recherche Agronomique (INRA), Unité de Recherches en Génomique-Info (UR INRA 1164), Centre de Recherche de Versailles, 78026 Versailles Cedex</wicri:regionArea><wicri:noRegion>78026 Versailles Cedex</wicri:noRegion><wicri:noRegion>78026 Versailles Cedex</wicri:noRegion></affiliation></author><author><name sortKey="Joet, Thierry" sort="Joet, Thierry" uniqKey="Joet T" first="Thierry" last="Joët">Thierry Joët</name><affiliation wicri:level="1"><nlm:affiliation>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Labadie, Karine" sort="Labadie, Karine" uniqKey="Labadie K" first="Karine" last="Labadie">Karine Labadie</name><affiliation wicri:level="1"><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry</wicri:regionArea><wicri:noRegion>91057 Evry</wicri:noRegion><wicri:noRegion>91057 Evry</wicri:noRegion></affiliation></author><author><name sortKey="Lan, Tianying" sort="Lan, Tianying" uniqKey="Lan T" first="Tianying" last="Lan">Tianying Lan</name><affiliation wicri:level="4"><nlm:affiliation>Department of Biological Sciences, 109 Cooke Hall, University at Buffalo (State University of New York), Buffalo, NY 14260, USA. Department of Biology, Chongqing University of Science and Technology, 4000042 Chongqing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Department of Biological Sciences, 109 Cooke Hall, University at Buffalo (State University of New York), Buffalo, NY 14260, USA. Department of Biology, Chongqing University of Science and Technology, 4000042 Chongqing</wicri:regionArea><orgName type="university">Université d'État de New York à Buffalo</orgName><placeName><settlement type="city">Buffalo (New York)</settlement><region type="state">État de New York</region></placeName></affiliation></author><author><name sortKey="Leclercq, Julie" sort="Leclercq, Julie" uniqKey="Leclercq J" first="Julie" last="Leclercq">Julie Leclercq</name><affiliation wicri:level="1"><nlm:affiliation>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier</wicri:regionArea><wicri:noRegion>34398 Montpellier</wicri:noRegion><wicri:noRegion>34398 Montpellier</wicri:noRegion></affiliation></author><author><name sortKey="Lepelley, Maud" sort="Lepelley, Maud" uniqKey="Lepelley M" first="Maud" last="Lepelley">Maud Lepelley</name><affiliation wicri:level="1"><nlm:affiliation>Nestlé Research and Development Centre, 101 Avenue Gustave Eiffel, Notre-Dame-d'Oé, BP 49716, 37097 Tours Cedex 2, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Nestlé Research and Development Centre, 101 Avenue Gustave Eiffel, Notre-Dame-d'Oé, BP 49716, 37097 Tours Cedex 2</wicri:regionArea><wicri:noRegion>37097 Tours Cedex 2</wicri:noRegion><wicri:noRegion>37097 Tours Cedex 2</wicri:noRegion></affiliation></author><author><name sortKey="Leroy, Thierry" sort="Leroy, Thierry" uniqKey="Leroy T" first="Thierry" last="Leroy">Thierry Leroy</name><affiliation wicri:level="1"><nlm:affiliation>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier</wicri:regionArea><wicri:noRegion>34398 Montpellier</wicri:noRegion><wicri:noRegion>34398 Montpellier</wicri:noRegion></affiliation></author><author><name sortKey="Li, Lei Ting" sort="Li, Lei Ting" uniqKey="Li L" first="Lei-Ting" last="Li">Lei-Ting Li</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Biology, 148 Edward R. Madigan Laboratory, MC-051, 1201 West Gregory Drive, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, 148 Edward R. Madigan Laboratory, MC-051, 1201 West Gregory Drive, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea><placeName><region type="state">Illinois</region></placeName></affiliation></author><author><name sortKey="Librado, Pablo" sort="Librado, Pablo" uniqKey="Librado P" first="Pablo" last="Librado">Pablo Librado</name><affiliation wicri:level="4"><nlm:affiliation>Departament de Genètica and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Diagonal 643, Barcelona 08028, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Departament de Genètica and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Diagonal 643, Barcelona 08028</wicri:regionArea><placeName><settlement type="city">Barcelone</settlement><region nuts="2" type="region">Catalogne</region><settlement type="city">Barcelone</settlement></placeName><orgName type="university">Université de Barcelone</orgName></affiliation></author><author><name sortKey="Lopez, Loredana" sort="Lopez, Loredana" uniqKey="Lopez L" first="Loredana" last="Lopez">Loredana Lopez</name><affiliation wicri:level="1"><nlm:affiliation>ENEA Trisaia Research Center, 75026 Rotondella, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>ENEA Trisaia Research Center, 75026 Rotondella</wicri:regionArea><wicri:noRegion>75026 Rotondella</wicri:noRegion></affiliation></author><author><name sortKey="Mu Oz, Adriana" sort="Mu Oz, Adriana" uniqKey="Mu Oz A" first="Adriana" last="Mu Oz">Adriana Mu Oz</name><affiliation wicri:level="4"><nlm:affiliation>Department of Mathematics, University of Maryland, Mathematics Building 084, University of Maryland, College Park, MD 20742, USA. School of Electrical Engineering and Computer Science, University of Ottawa, 800 King Edward Avenue, Ottawa, Ontario K1N 6N5, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Mathematics, University of Maryland, Mathematics Building 084, University of Maryland, College Park, MD 20742, USA. School of Electrical Engineering and Computer Science, University of Ottawa, 800 King Edward Avenue, Ottawa, Ontario K1N 6N5</wicri:regionArea><orgName type="university">Université du Maryland</orgName><placeName><settlement type="city">College Park (Maryland)</settlement><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Noel, Benjamin" sort="Noel, Benjamin" uniqKey="Noel B" first="Benjamin" last="Noel">Benjamin Noel</name><affiliation wicri:level="1"><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry</wicri:regionArea><wicri:noRegion>91057 Evry</wicri:noRegion><wicri:noRegion>91057 Evry</wicri:noRegion></affiliation></author><author><name sortKey="Pallavicini, Alberto" sort="Pallavicini, Alberto" uniqKey="Pallavicini A" first="Alberto" last="Pallavicini">Alberto Pallavicini</name><affiliation wicri:level="1"><nlm:affiliation>Department of Life Sciences, University of Trieste, Via Licio Giorgieri 5, 34127 Trieste, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Life Sciences, University of Trieste, Via Licio Giorgieri 5, 34127 Trieste</wicri:regionArea><wicri:noRegion>34127 Trieste</wicri:noRegion></affiliation></author><author><name sortKey="Perrotta, Gaetano" sort="Perrotta, Gaetano" uniqKey="Perrotta G" first="Gaetano" last="Perrotta">Gaetano Perrotta</name><affiliation wicri:level="1"><nlm:affiliation>ENEA Trisaia Research Center, 75026 Rotondella, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>ENEA Trisaia Research Center, 75026 Rotondella</wicri:regionArea><wicri:noRegion>75026 Rotondella</wicri:noRegion></affiliation></author><author><name sortKey="Poncet, Valerie" sort="Poncet, Valerie" uniqKey="Poncet V" first="Valérie" last="Poncet">Valérie Poncet</name><affiliation wicri:level="1"><nlm:affiliation>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Pot, David" sort="Pot, David" uniqKey="Pot D" first="David" last="Pot">David Pot</name><affiliation wicri:level="1"><nlm:affiliation>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier</wicri:regionArea><wicri:noRegion>34398 Montpellier</wicri:noRegion><wicri:noRegion>34398 Montpellier</wicri:noRegion></affiliation></author><author><name sortKey="Priyono" sort="Priyono" uniqKey="Priyono" last="Priyono">Priyono</name><affiliation wicri:level="1"><nlm:affiliation>Indonesian Coffee and Cocoa Institute, Jember, East Java, Indonesia.</nlm:affiliation><country xml:lang="fr">Indonésie</country><wicri:regionArea>Indonesian Coffee and Cocoa Institute, Jember, East Java</wicri:regionArea><wicri:noRegion>East Java</wicri:noRegion></affiliation></author><author><name sortKey="Rigoreau, Michel" sort="Rigoreau, Michel" uniqKey="Rigoreau M" first="Michel" last="Rigoreau">Michel Rigoreau</name><affiliation wicri:level="1"><nlm:affiliation>Nestlé Research and Development Centre, 101 Avenue Gustave Eiffel, Notre-Dame-d'Oé, BP 49716, 37097 Tours Cedex 2, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Nestlé Research and Development Centre, 101 Avenue Gustave Eiffel, Notre-Dame-d'Oé, BP 49716, 37097 Tours Cedex 2</wicri:regionArea><wicri:noRegion>37097 Tours Cedex 2</wicri:noRegion><wicri:noRegion>37097 Tours Cedex 2</wicri:noRegion></affiliation></author><author><name sortKey="Rouard, Mathieu" sort="Rouard, Mathieu" uniqKey="Rouard M" first="Mathieu" last="Rouard">Mathieu Rouard</name><affiliation wicri:level="1"><nlm:affiliation>Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34397 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34397 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Rozas, Julio" sort="Rozas, Julio" uniqKey="Rozas J" first="Julio" last="Rozas">Julio Rozas</name><affiliation wicri:level="4"><nlm:affiliation>Departament de Genètica and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Diagonal 643, Barcelona 08028, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Departament de Genètica and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Diagonal 643, Barcelona 08028</wicri:regionArea><placeName><settlement type="city">Barcelone</settlement><region nuts="2" type="region">Catalogne</region><settlement type="city">Barcelone</settlement></placeName><orgName type="university">Université de Barcelone</orgName></affiliation></author><author><name sortKey="Tranchant Dubreuil, Christine" sort="Tranchant Dubreuil, Christine" uniqKey="Tranchant Dubreuil C" first="Christine" last="Tranchant-Dubreuil">Christine Tranchant-Dubreuil</name><affiliation wicri:level="1"><nlm:affiliation>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Vanburen, Robert" sort="Vanburen, Robert" uniqKey="Vanburen R" first="Robert" last="Vanburen">Robert Vanburen</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Biology, 148 Edward R. Madigan Laboratory, MC-051, 1201 West Gregory Drive, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, 148 Edward R. Madigan Laboratory, MC-051, 1201 West Gregory Drive, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea><placeName><region type="state">Illinois</region></placeName></affiliation></author><author><name sortKey="Zhang, Qiong" sort="Zhang, Qiong" uniqKey="Zhang Q" first="Qiong" last="Zhang">Qiong Zhang</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Biology, 148 Edward R. Madigan Laboratory, MC-051, 1201 West Gregory Drive, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, 148 Edward R. Madigan Laboratory, MC-051, 1201 West Gregory Drive, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea><placeName><region type="state">Illinois</region></placeName></affiliation></author><author><name sortKey="Andrade, Alan C" sort="Andrade, Alan C" uniqKey="Andrade A" first="Alan C" last="Andrade">Alan C. Andrade</name><affiliation wicri:level="1"><nlm:affiliation>Laboratório de Genética Molecular, Núcleo de Biotecnologia (NTBio), Embrapa Recursos Genéticos e Biotecnologia, Final Av. W/5 Norte, Parque Estação Biológia, Brasília-DF 70770-917, Brazil.</nlm:affiliation><country xml:lang="fr">Brésil</country><wicri:regionArea>Laboratório de Genética Molecular, Núcleo de Biotecnologia (NTBio), Embrapa Recursos Genéticos e Biotecnologia, Final Av. W/5 Norte, Parque Estação Biológia, Brasília-DF 70770-917</wicri:regionArea><wicri:noRegion>Brasília-DF 70770-917</wicri:noRegion></affiliation></author><author><name sortKey="Argout, Xavier" sort="Argout, Xavier" uniqKey="Argout X" first="Xavier" last="Argout">Xavier Argout</name><affiliation wicri:level="1"><nlm:affiliation>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Amélioration Génétique et Adaptation des Plantes Méditerranéennes et Tropicales (AGAP), F-34398 Montpellier</wicri:regionArea><wicri:noRegion>34398 Montpellier</wicri:noRegion><wicri:noRegion>34398 Montpellier</wicri:noRegion></affiliation></author><author><name sortKey="Bertrand, Benoit" sort="Bertrand, Benoit" uniqKey="Bertrand B" first="Benoît" last="Bertrand">Benoît Bertrand</name><affiliation wicri:level="1"><nlm:affiliation>CIRAD, UMR RPB (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR RPB (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="De Kochko, Alexandre" sort="De Kochko, Alexandre" uniqKey="De Kochko A" first="Alexandre" last="De Kochko">Alexandre De Kochko</name><affiliation wicri:level="1"><nlm:affiliation>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>IRD, UMR Diversité Adaptation et Développement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author><author><name sortKey="Graziosi, Giorgio" sort="Graziosi, Giorgio" uniqKey="Graziosi G" first="Giorgio" last="Graziosi">Giorgio Graziosi</name><affiliation wicri:level="1"><nlm:affiliation>Department of Life Sciences, University of Trieste, Via Licio Giorgieri 5, 34127 Trieste, Italy. DNA Analytica Srl, Via Licio Giorgieri 5, 34127 Trieste, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Life Sciences, University of Trieste, Via Licio Giorgieri 5, 34127 Trieste, Italy. DNA Analytica Srl, Via Licio Giorgieri 5, 34127 Trieste</wicri:regionArea><wicri:noRegion>34127 Trieste</wicri:noRegion></affiliation></author><author><name sortKey="Henry, Robert J" sort="Henry, Robert J" uniqKey="Henry R" first="Robert J" last="Henry">Robert J. Henry</name><affiliation wicri:level="1"><nlm:affiliation>Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, St. Lucia 4072, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, St. Lucia 4072</wicri:regionArea><wicri:noRegion>St. Lucia 4072</wicri:noRegion></affiliation></author><author><name sortKey="Jayarama" sort="Jayarama" uniqKey="Jayarama" last="Jayarama">Jayarama</name><affiliation wicri:level="1"><nlm:affiliation>Central Coffee Research Institute, Coffee Board, Coffee Research Station (Post) - 577 117 Chikmagalur District, Karnataka State, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Central Coffee Research Institute, Coffee Board, Coffee Research Station (Post) - 577 117 Chikmagalur District, Karnataka State</wicri:regionArea><wicri:noRegion>Karnataka State</wicri:noRegion></affiliation></author><author><name sortKey="Ming, Ray" sort="Ming, Ray" uniqKey="Ming R" first="Ray" last="Ming">Ray Ming</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Biology, 148 Edward R. Madigan Laboratory, MC-051, 1201 West Gregory Drive, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Biology, 148 Edward R. Madigan Laboratory, MC-051, 1201 West Gregory Drive, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea><placeName><region type="state">Illinois</region></placeName></affiliation></author><author><name sortKey="Nagai, Chifumi" sort="Nagai, Chifumi" uniqKey="Nagai C" first="Chifumi" last="Nagai">Chifumi Nagai</name><affiliation wicri:level="2"><nlm:affiliation>Hawaii Agriculture Research Center, Post Office Box 100, Kunia, HI 96759-0100, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Hawaii Agriculture Research Center, Post Office Box 100, Kunia, HI 96759-0100</wicri:regionArea><placeName><region type="state">Hawaï</region></placeName></affiliation></author><author><name sortKey="Rounsley, Steve" sort="Rounsley, Steve" uniqKey="Rounsley S" first="Steve" last="Rounsley">Steve Rounsley</name><affiliation wicri:level="2"><nlm:affiliation>BIO5 Institute, University of Arizona, 1657 Helen Street, Tucson, AZ 85721, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>BIO5 Institute, University of Arizona, 1657 Helen Street, Tucson, AZ 85721</wicri:regionArea><placeName><region type="state">Arizona</region></placeName></affiliation></author><author><name sortKey="Sankoff, David" sort="Sankoff, David" uniqKey="Sankoff D" first="David" last="Sankoff">David Sankoff</name><affiliation wicri:level="1"><nlm:affiliation>Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, Ontario K1N 6N5, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, Ontario K1N 6N5</wicri:regionArea><wicri:noRegion>Ontario K1N 6N5</wicri:noRegion></affiliation></author><author><name sortKey="Giuliano, Giovanni" sort="Giuliano, Giovanni" uniqKey="Giuliano G" first="Giovanni" last="Giuliano">Giovanni Giuliano</name><affiliation wicri:level="1"><nlm:affiliation>Italian National Agency for New Technologies, Energy and Sustainable Development (ENEA) Casaccia Research Center, Via Anguillarese 301, 00123 Roma, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Italian National Agency for New Technologies, Energy and Sustainable Development (ENEA) Casaccia Research Center, Via Anguillarese 301, 00123 Roma</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Albert, Victor A" sort="Albert, Victor A" uniqKey="Albert V" first="Victor A" last="Albert">Victor A. Albert</name><affiliation wicri:level="4"><nlm:affiliation>Department of Biological Sciences, 109 Cooke Hall, University at Buffalo (State University of New York), Buffalo, NY 14260, USA. vaalbert@buffalo.edu pwincker@genoscope.cns.fr philippe.lashermes@ird.fr.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biological Sciences, 109 Cooke Hall, University at Buffalo (State University of New York), Buffalo, NY 14260</wicri:regionArea><placeName><region type="state">État de New York</region><settlement type="city">Buffalo (New York)</settlement></placeName><orgName type="university">Université d'État de New York à Buffalo</orgName></affiliation></author><author><name sortKey="Wincker, Patrick" sort="Wincker, Patrick" uniqKey="Wincker P" first="Patrick" last="Wincker">Patrick Wincker</name><affiliation wicri:level="3"><nlm:affiliation>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France. CNRS, UMR 8030, CP5706, Evry, France. Université d'Evry, UMR 8030, CP5706, Evry, France. vaalbert@buffalo.edu pwincker@genoscope.cns.fr philippe.lashermes@ird.fr.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Commissariat à l'Energie Atomique, Genoscope, Institut de Génomique, BP5706, 91057 Evry, France. CNRS, UMR 8030, CP5706, Evry, France. Université d'Evry, UMR 8030, CP5706, Evry</wicri:regionArea><placeName><region type="region">Île-de-France</region><region type="old region">Île-de-France</region><settlement type="city">Évry (Essonne)</settlement></placeName></affiliation></author><author><name sortKey="Lashermes, Philippe" sort="Lashermes, Philippe" uniqKey="Lashermes P" first="Philippe" last="Lashermes">Philippe Lashermes</name><affiliation wicri:level="1"><nlm:affiliation>Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5, France. vaalbert@buffalo.edu pwincker@genoscope.cns.fr philippe.lashermes@ird.fr.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Institut de Recherche pour le Développement (IRD), UMR Résistance des Plantes aux Bioagresseurs (RPB) [Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5</wicri:regionArea><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion><wicri:noRegion>34394 Montpellier Cedex 5</wicri:noRegion></affiliation></author></analytic><series><title level="j">Science (New York, N.Y.)</title><idno type="eISSN">1095-9203</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Caffeine (biosynthesis)</term><term>Caffeine (genetics)</term><term>Coffea (classification)</term><term>Coffea (genetics)</term><term>Evolution, Molecular</term><term>Genome, Plant</term><term>Methyltransferases (genetics)</term><term>Methyltransferases (physiology)</term><term>Phylogeny</term><term>Plant Proteins (genetics)</term><term>Plant Proteins (physiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Caféine (biosynthèse)</term><term>Caféine (génétique)</term><term>Coffea ()</term><term>Coffea (génétique)</term><term>Génome végétal</term><term>Methyltransferases (génétique)</term><term>Methyltransferases (physiologie)</term><term>Phylogénie</term><term>Protéines végétales (génétique)</term><term>Protéines végétales (physiologie)</term><term>Évolution moléculaire</term></keywords><keywords scheme="MESH" type="chemical" qualifier="biosynthesis" xml:lang="en"><term>Caffeine</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Caffeine</term><term>Methyltransferases</term><term>Plant Proteins</term></keywords><keywords scheme="MESH" qualifier="biosynthèse" xml:lang="fr"><term>Caféine</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Coffea</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coffea</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Caféine</term><term>Coffea</term><term>Methyltransferases</term><term>Protéines végétales</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Methyltransferases</term><term>Protéines végétales</term></keywords><keywords scheme="MESH" type="chemical" qualifier="physiology" xml:lang="en"><term>Methyltransferases</term><term>Plant Proteins</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Evolution, Molecular</term><term>Genome, Plant</term><term>Phylogeny</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Coffea</term><term>Génome végétal</term><term>Phylogénie</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Coffee is a valuable beverage crop due to its characteristic flavor, aroma, and the stimulating effects of caffeine. We generated a high-quality draft genome of the species Coffea canephora, which displays a conserved chromosomal gene order among asterid angiosperms. Although it shows no sign of the whole-genome triplication identified in Solanaceae species such as tomato, the genome includes several species-specific gene family expansions, among them N-methyltransferases (NMTs) involved in caffeine production, defense-related genes, and alkaloid and flavonoid enzymes involved in secondary compound synthesis. Comparative analyses of caffeine NMTs demonstrate that these genes expanded through sequential tandem duplications independently of genes from cacao and tea, suggesting that caffeine in eudicots is of polyphyletic origin.</div></front></TEI><affiliations><list><country><li>Allemagne</li><li>Australie</li><li>Brésil</li><li>Canada</li><li>Espagne</li><li>France</li><li>Inde</li><li>Indonésie</li><li>Italie</li><li>République populaire de Chine</li><li>États-Unis</li></country><region><li>Arizona</li><li>Catalogne</li><li>Hawaï</li><li>Illinois</li><li>Latium</li><li>Maryland</li><li>État de New York</li><li>Île-de-France</li></region><settlement><li>Barcelone</li><li>Buffalo (New York)</li><li>College Park (Maryland)</li><li>Rome</li><li>Évry (Essonne)</li></settlement><orgName><li>Université d'État de New York à Buffalo</li><li>Université de Barcelone</li><li>Université du Maryland</li></orgName></list><tree><country name="France"><region name="Île-de-France"><name sortKey="Denoeud, France" sort="Denoeud, France" uniqKey="Denoeud F" first="France" last="Denoeud">France Denoeud</name></region><name sortKey="Alberti, Adriana" sort="Alberti, Adriana" uniqKey="Alberti A" first="Adriana" last="Alberti">Adriana Alberti</name><name sortKey="Anthony, Francois" sort="Anthony, Francois" uniqKey="Anthony F" first="François" last="Anthony">François Anthony</name><name sortKey="Argout, Xavier" sort="Argout, Xavier" uniqKey="Argout X" first="Xavier" last="Argout">Xavier Argout</name><name sortKey="Aury, Jean Marc" sort="Aury, Jean Marc" uniqKey="Aury J" first="Jean-Marc" last="Aury">Jean-Marc Aury</name><name sortKey="Bento, Pascal" sort="Bento, Pascal" uniqKey="Bento P" first="Pascal" last="Bento">Pascal Bento</name><name sortKey="Bernard, Maria" sort="Bernard, Maria" uniqKey="Bernard M" first="Maria" last="Bernard">Maria Bernard</name><name sortKey="Bertrand, Benoit" sort="Bertrand, Benoit" uniqKey="Bertrand B" first="Benoît" last="Bertrand">Benoît Bertrand</name><name sortKey="Bocs, Stephanie" sort="Bocs, Stephanie" uniqKey="Bocs S" first="Stéphanie" last="Bocs">Stéphanie Bocs</name><name sortKey="Campa, Claudine" sort="Campa, Claudine" uniqKey="Campa C" first="Claudine" last="Campa">Claudine Campa</name><name sortKey="Cenci, Alberto" sort="Cenci, Alberto" uniqKey="Cenci A" first="Alberto" last="Cenci">Alberto Cenci</name><name sortKey="Combes, Marie Christine" sort="Combes, Marie Christine" uniqKey="Combes M" first="Marie-Christine" last="Combes">Marie-Christine Combes</name><name sortKey="Crouzillat, Dominique" sort="Crouzillat, Dominique" uniqKey="Crouzillat D" first="Dominique" last="Crouzillat">Dominique Crouzillat</name><name sortKey="Da Silva, Corinne" sort="Da Silva, Corinne" uniqKey="Da Silva C" first="Corinne" last="Da Silva">Corinne Da Silva</name><name sortKey="De Bellis, Fabien" sort="De Bellis, Fabien" uniqKey="De Bellis F" first="Fabien" last="De Bellis">Fabien De Bellis</name><name sortKey="De Kochko, Alexandre" sort="De Kochko, Alexandre" uniqKey="De Kochko A" first="Alexandre" last="De Kochko">Alexandre De Kochko</name><name sortKey="Dereeper, Alexis" sort="Dereeper, Alexis" uniqKey="Dereeper A" first="Alexis" last="Dereeper">Alexis Dereeper</name><name sortKey="Droc, Gaetan" sort="Droc, Gaetan" uniqKey="Droc G" first="Gaëtan" last="Droc">Gaëtan Droc</name><name sortKey="Dussert, Stephane" sort="Dussert, Stephane" uniqKey="Dussert S" first="Stéphane" last="Dussert">Stéphane Dussert</name><name sortKey="Garsmeur, Olivier" sort="Garsmeur, Olivier" uniqKey="Garsmeur O" first="Olivier" last="Garsmeur">Olivier Garsmeur</name><name sortKey="Gayraud, Thomas" sort="Gayraud, Thomas" uniqKey="Gayraud T" first="Thomas" last="Gayraud">Thomas Gayraud</name><name sortKey="Guignon, Valentin" sort="Guignon, Valentin" uniqKey="Guignon V" first="Valentin" last="Guignon">Valentin Guignon</name><name sortKey="Guyot, Romain" sort="Guyot, Romain" uniqKey="Guyot R" first="Romain" last="Guyot">Romain Guyot</name><name sortKey="Jamilloux, Veronique" sort="Jamilloux, Veronique" uniqKey="Jamilloux V" first="Véronique" last="Jamilloux">Véronique Jamilloux</name><name sortKey="Joet, Thierry" sort="Joet, Thierry" uniqKey="Joet T" first="Thierry" last="Joët">Thierry Joët</name><name sortKey="Labadie, Karine" sort="Labadie, Karine" uniqKey="Labadie K" first="Karine" last="Labadie">Karine Labadie</name><name sortKey="Lashermes, Philippe" sort="Lashermes, Philippe" uniqKey="Lashermes P" first="Philippe" last="Lashermes">Philippe Lashermes</name><name sortKey="Leclercq, Julie" sort="Leclercq, Julie" uniqKey="Leclercq J" first="Julie" last="Leclercq">Julie Leclercq</name><name sortKey="Lepelley, Maud" sort="Lepelley, Maud" uniqKey="Lepelley M" first="Maud" last="Lepelley">Maud Lepelley</name><name sortKey="Leroy, Thierry" sort="Leroy, Thierry" uniqKey="Leroy T" first="Thierry" last="Leroy">Thierry Leroy</name><name sortKey="Noel, Benjamin" sort="Noel, Benjamin" uniqKey="Noel B" first="Benjamin" last="Noel">Benjamin Noel</name><name sortKey="Poncet, Valerie" sort="Poncet, Valerie" uniqKey="Poncet V" first="Valérie" last="Poncet">Valérie Poncet</name><name sortKey="Pot, David" sort="Pot, David" uniqKey="Pot D" first="David" last="Pot">David Pot</name><name sortKey="Rigoreau, Michel" sort="Rigoreau, Michel" uniqKey="Rigoreau M" first="Michel" last="Rigoreau">Michel Rigoreau</name><name sortKey="Rouard, Mathieu" sort="Rouard, Mathieu" uniqKey="Rouard M" first="Mathieu" last="Rouard">Mathieu Rouard</name><name sortKey="Tranchant Dubreuil, Christine" sort="Tranchant Dubreuil, Christine" uniqKey="Tranchant Dubreuil C" first="Christine" last="Tranchant-Dubreuil">Christine Tranchant-Dubreuil</name><name sortKey="Wincker, Patrick" sort="Wincker, Patrick" uniqKey="Wincker P" first="Patrick" last="Wincker">Patrick Wincker</name></country><country name="États-Unis"><region name="État de New York"><name sortKey="Carretero Paulet, Lorenzo" sort="Carretero Paulet, Lorenzo" uniqKey="Carretero Paulet L" first="Lorenzo" last="Carretero-Paulet">Lorenzo Carretero-Paulet</name></region><name sortKey="Albert, Victor A" sort="Albert, Victor A" uniqKey="Albert V" first="Victor A" last="Albert">Victor A. Albert</name><name sortKey="Li, Lei Ting" sort="Li, Lei Ting" uniqKey="Li L" first="Lei-Ting" last="Li">Lei-Ting Li</name><name sortKey="Ming, Ray" sort="Ming, Ray" uniqKey="Ming R" first="Ray" last="Ming">Ray Ming</name><name sortKey="Nagai, Chifumi" sort="Nagai, Chifumi" uniqKey="Nagai C" first="Chifumi" last="Nagai">Chifumi Nagai</name><name sortKey="Rounsley, Steve" sort="Rounsley, Steve" uniqKey="Rounsley S" first="Steve" last="Rounsley">Steve Rounsley</name><name sortKey="Vanburen, Robert" sort="Vanburen, Robert" uniqKey="Vanburen R" first="Robert" last="Vanburen">Robert Vanburen</name><name sortKey="Zhang, Qiong" sort="Zhang, Qiong" uniqKey="Zhang Q" first="Qiong" last="Zhang">Qiong Zhang</name></country><country name="Italie"><region name="Latium"><name sortKey="Pietrella, Marco" sort="Pietrella, Marco" uniqKey="Pietrella M" first="Marco" last="Pietrella">Marco Pietrella</name></region><name sortKey="Aprea, Giuseppe" sort="Aprea, Giuseppe" uniqKey="Aprea G" first="Giuseppe" last="Aprea">Giuseppe Aprea</name><name sortKey="Daddiego, Loretta" sort="Daddiego, Loretta" uniqKey="Daddiego L" first="Loretta" last="Daddiego">Loretta Daddiego</name><name sortKey="Giuliano, Giovanni" sort="Giuliano, Giovanni" uniqKey="Giuliano G" first="Giovanni" last="Giuliano">Giovanni Giuliano</name><name sortKey="Graziosi, Giorgio" sort="Graziosi, Giorgio" uniqKey="Graziosi G" first="Giorgio" last="Graziosi">Giorgio Graziosi</name><name sortKey="Lopez, Loredana" sort="Lopez, Loredana" uniqKey="Lopez L" first="Loredana" last="Lopez">Loredana Lopez</name><name sortKey="Pallavicini, Alberto" sort="Pallavicini, Alberto" uniqKey="Pallavicini A" first="Alberto" last="Pallavicini">Alberto Pallavicini</name><name sortKey="Perrotta, Gaetano" sort="Perrotta, Gaetano" uniqKey="Perrotta G" first="Gaetano" last="Perrotta">Gaetano Perrotta</name></country><country name="Canada"><noRegion><name sortKey="Zheng, Chunfang" sort="Zheng, Chunfang" uniqKey="Zheng C" first="Chunfang" last="Zheng">Chunfang Zheng</name></noRegion><name sortKey="Mu Oz, Adriana" sort="Mu Oz, Adriana" uniqKey="Mu Oz A" first="Adriana" last="Mu Oz">Adriana Mu Oz</name><name sortKey="Sankoff, David" sort="Sankoff, David" uniqKey="Sankoff D" first="David" last="Sankoff">David Sankoff</name></country><country name="Allemagne"><noRegion><name sortKey="Jahn, Katharina" sort="Jahn, Katharina" uniqKey="Jahn K" first="Katharina" last="Jahn">Katharina Jahn</name></noRegion></country><country name="République populaire de Chine"><region name="État de New York"><name sortKey="Lan, Tianying" sort="Lan, Tianying" uniqKey="Lan T" first="Tianying" last="Lan">Tianying Lan</name></region></country><country name="Espagne"><region name="Catalogne"><name sortKey="Librado, Pablo" sort="Librado, Pablo" uniqKey="Librado P" first="Pablo" last="Librado">Pablo Librado</name></region><name sortKey="Rozas, Julio" sort="Rozas, Julio" uniqKey="Rozas J" first="Julio" last="Rozas">Julio Rozas</name></country><country name="Indonésie"><noRegion><name sortKey="Priyono" sort="Priyono" uniqKey="Priyono" last="Priyono">Priyono</name></noRegion></country><country name="Brésil"><noRegion><name sortKey="Andrade, Alan C" sort="Andrade, Alan C" uniqKey="Andrade A" first="Alan C" last="Andrade">Alan C. Andrade</name></noRegion></country><country name="Australie"><noRegion><name sortKey="Henry, Robert J" sort="Henry, Robert J" uniqKey="Henry R" first="Robert J" last="Henry">Robert J. Henry</name></noRegion></country><country name="Inde"><noRegion><name sortKey="Jayarama" sort="Jayarama" uniqKey="Jayarama" last="Jayarama">Jayarama</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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